Computer Programs
My Computer Programs for Evolutionary Analysis
1. R phylogenetics (phytools) page. Also see the CRAN page for "phytools".
2. Old programs page. (Mostly contains a variety of C programs for evolutionary analysis, as well as some pre-"phytools" R functions.)
3. Other projects:| - popgen 0.2: An R package for a few different types of forward-time population genetic numerical analysis, game theoretic (hawk-dove) analysis, and simulation (PDF manual; archive). |
| - tps.process.R: A couple of functions for processing .tps files produced by the morphometrics program tpsDIG. |
Webpages of General Usefulness
1. Felsenstein's phylogeny programs page.
2. R Project for Statistical Computing page. Also see the CRAN phylogenetics task view.
3. The "ape" homepage. "ape" (by Paradis et al. 2004) is the most important R library for phylogenetic analyses.
4. More links coming soon. . . .